Student interns in the BRC

Three talented, motivated undergraduates worked in the BRC invertebrate collections for 8 weeks this summer, on various tasks associated with the NSF-sponsored project to rehouse and digitize the Rettenmeyer Army Ant Guest Collection. Andrew Doucette, an MCB major with an EEB minor, Mia Nahom, a rising sophomore with an as-yet undecided major, and Rebecca Trouern-Trend, a rising senior Illustration major.

Mia and Andrew interpreted and entered field card records, transferred and labeled vialed specimens, and ran the “Find the Mite” game for our very successful AntU day. Beck continued the work started by intern Sam Stine, and mounted examples of several hundred army ant colonies to be imaged for the AAGC database. She also is establishing an imaging protocol and taking images.

Mia Nahom was an integral part of the AAGC team this summer. Although she had finished only a year of college, Mia proved exceptionally capable at a variety of tasks associated with NSF-sponsored project to rehouse and digitize the Rettenmeyer Army Ant Guest Collection. She mastered interpreting hand-written field cards and entering pertinent data from them; she learned how to scan microscope slides and edit the images for web access. Mia also tracked down taxonomic changes and organized specimens.

For more stories about the students’ work during this summer visit our  facebook page.

Escape to the UCONN rainforest

As part of AntU activities held July 26, during BugWeek, visitors were invited to escape to the UCONN rainforest, and participate in a pollination scavenger hunt. Close to 300 visitors explored the diverse collection of about 3000 plant species in search of plants developing flowers pollinated by insects. The warm, rainy and humid weather enhanced the experience of a tropical rainforest! Visitors would leave with a free potted plant such as coffee, Cuban oregano or sugar cane! Great day for all involved.

Special thanks to Lauren Stanley, Henry Frye and visiting high school senior from Chicago, Alexandra Kwiecien, for inspiring visitors during their discovery of our local and highly diverse rainforest.

News from the worm-lichen

Ioana Onuţ‐Brännström and colleagues from Uppsala published two studies focusing on the widespread worm-lichen genus Thamnolia,  including the description of a new species, integrating specimens from the Cape Horn region held in the CONN herbarium. Based on these studies, the identifications of our holdings were revised and updated.

1. Onuţ‐Brännström, I., L. Tibell & H. Johannesson. 2017. A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories. Ecology and Evolution 7: 3602–3615. pdf

Abstract readsThamnolia is a lichenized fungus with an extremely wide distribution, being encountered in arctic and alpine environments in most continents. In this study, we used molecular markers to investigate the population structure of the fungal symbiont and the associated photosynthetic partner of Thamnolia. By analyzing molecular, morphological, and chemical variation among 253 specimens covering the species distribution range, we revealed the existence of three mycobiont lineages. One lineage (Lineage A) is confined to the tundra region of Siberia and the Aleutian Islands, a second (Lineage B) is found in the high alpine region of the Alps and the Carpathians Mountains, and a third (Lineage C) has a worldwide distribution and covers both the aforementioned ecosystems. Molecular dating analysis indicated that the split of the three lineages is older than the last glacial maximum, but the distribution ranges and the population genetic analyses suggest an influence of last glacial period on the present‐day population structure of each lineage. We found a very low diversity of Lineage B, but a higher and similar one in Lineages A and C. Demographic analyses suggested that Lineage C has its origin in the Northern Hemisphere, possibly Scandinavia, and that it has passed through a bottleneck followed by a recent population expansion. While all three lineages reproduce clonally, recombination tests suggest rare or past recombination in both Lineages A and C. Moreover, our data showed that Lineage C has a comparatively low photobiont specificity, being found associated with four widespread Trebouxia lineages (three of them also shared with other lichens), while Lineages A and B exclusively harbor T. simplexs. lat. Finally, we did not find support for the recognition of taxa in Thamnolia based on either morphological or chemical characters.

2. Ioana, O.B., H. Johannesson & L. Tibell. 2018. Thamnolia tundrae sp. nov., a cryptic species and putative glacial relict. The Lichenologist 50: 59–75. pdf

Abstract reads: The lichen species of the genus Thamnolia, with their striking wormlike thalli and frequent occurrence in arctic and tundra environments, have often been debated with regard to the use of chemistry in lichen taxonomy. Phylogenetic studies have arrived at different conclusions as to the recognition of species in the genus, but in a recent study based on the analyses of six nuclear markers (genes or noncoding regions) of a worldwide sample of Thamnolia, we showed the existence of three well-supported lineages with two different chemistries and geographical distributions. Here, we present two analyses based on ITS and three markers, respectively, which were extended from the study mentioned above to include type specimens and additional Thamnolia strains and taxa. In these analyses the same three clades were retrieved. A putative DEAD-box helicase is used here for the first time as an informative phylogenetic marker to provide taxonomic resolution at species level. The distribution of morphological and chemical characters across the phylogeny was analyzed and it was concluded that three morphologically cryptic, but genetically well supported, species occur: T. vermicularis s. str., T. subuliformis s. str. and T. tundrae sp. nov. Thamnolia vermicularis s. str. contains individuals with uniform secondary chemistry (producing thamnolic acid) and a rather limited distribution in the European Alps, Tatra Mts and the Western Carpathians, a distribution which might result from glacial survival in an adjacent refugium/refugia. Thamnolia subuliformis s. str. is widely distributed in all hemispheres and the samples contain two chemotypes (either with thamnolic or squamatic acids). Thamnolia tundrae is described as new; it produces baeomycesic and squamatic acids, and has a distribution limited to the arctic tundra of Eurasia extending to the Aleutian Islands in North America. It may have survived the latest glaciation in coastal refugia near its present distribution. Thus, secondary chemistry alone is not suitable for characterizing species in Thamnolia, secondary chemistry and geographical origin are informative, and the ITS region can be confidently used for species recognition. Nomenclatural notes are given on several other names that have been used in Thamnolia.

New species of lichenized fungus

Simon A., J. Di Meglio, T. Goward, K. Dillman, T. Spribille & B. Goffinet. 2018. Sticta torii sp. nov., a remarkable lichen of high conservation priority from northwestern North America. Graphis Scripta 30: 105–114. pdf

Abstract readsSticta torii Simon & Goward sp. nov. is an isidiate lichen on Alnus, Malus and Picea branches in hypermaritime regions of northwestern North America. It is a rare species, currently known from only a few localities along a narrow longitudinal range in Southeast Alaska, British Columbia and Oregon. It differs from S. fuliginosa and S. sylvatica in its smaller, more irregular lobes and generally well-developed fringe of marginal isidia, and from S. beauvoisii in its smaller size, less elongate lobes and distinctly arbuscular to penicillate marginal isidia. Also diagnostic are the cyphellae, the basal portions of which bear cells with numerous papillae – a feature shared with a small group of closely allied neotropical species including the recently described S. arbuscula and S. arbusculotomentosa. These latter species, however, bear tomentum over the upper surface, unlike S. torii, which is glabrous.

The holotype is deposited in the CONN herbarium.

New publication on algae

Pediastrum duplex. Copyright by authors

McManus, H.A., K. Fučíková, P.O. Lewis, L.A. Lewis & K.G. Karol. 2018. Organellar phylogenomics inform systematics in the green algal family Hydrodictyaceae (Chlorophyceae) and provide clues to the complex evolutionary history of plastid genomes in the green algal tree of life. American Journal of Botany 105(3): 315–329.  pdf

The abstract reads: PREMISE OF THE STUDY: Phylogenomic analyses across the green algae are resolving relationships at the class, order, and family levels and highlighting dynamic patterns of evolution in organellar genomes. Here we present a within- family phylogenomic study to resolve genera and species relationships in the family Hydrodictyaceae (Chlorophyceae), for which poor resolution in previous phylogenetic studies, along with divergent morphological traits, have precluded taxonomic revisions.
METHODS: Complete plastome sequences and mitochondrial protein-coding gene sequences were acquired from representatives of the Hydrodictyaceae using next-generation sequencing methods. Plastomes were characterized, and gene order and content were compared with plastomes spanning the Sphaeropleales. Single-gene and concatenated-gene phylogenetic analyses of plastid and mitochondrial genes were performed.
KEY RESULTS: The Hydrodictyaceae contain the largest sphaeroplealean plastomes thus far fully sequenced. Conservation of plastome gene order within Hydrodictyaceae is striking compared with more dynamic patterns revealed across Sphaeropleales.  Phylogenetic analyses resolve Hydrodictyon sister to a monophyletic Pediastrum, though the morphologically distinct P. angulosum and P. duplex continue to be polyphyletic. Analyses of plastid data supported the neochloridacean genus Chlorotetraëdron as sister to Hydrodictyaceae, while conflicting signal was found in the mitochondrial data.
CONCLUSIONS: A phylogenomic approach resolved within-family relationships not obtainable with previous phylogenetic analyses. Denser taxon sampling across Sphaeropleales is necessary to capture patterns in plastome evolution, and further taxa and studies are needed to fully resolve the sister lineage to Hydrodictyaceae and polyphyly of Pediastrum angulosum and P. duplex.

UCONN part of global orchid conservation

The Botanic Gardens Conservation International released “Orchids: 2017 Global Ex situ Collections Assessment”, aimed at promoting the ex-situ conservation of 59% of orchids species considered threatened in the wild.

The collection of living plants of UCONN’s Biodiversity Research Collection, is one of 37 institutions that provided detailed accessions data to this study.  In particular, given its diverse species holdings, our collection contributed to the depth of this report.  10% of the orchid species grown here at UConn are represented in 5 or fewer collections worldwide and a handful are only in cultivation here in Storrs at the present time.

 

New publication on plants

Dr. Matt Opel co-authored a publication with A.J. Young, L. Pulido Suarez, & M. Kapralov entitled”Leaf epidermal structure in the dwarf succulent genus Conophytum N.E. Br. (Aizoaceae). The summary reads: The epidermal structure of 66 species and subspecies of the dwarf succulent genus Conophytum N.E. Br. was examined using scanning electron microscopy. Taxa within this genus possess a number of adaptations to their arid environment including sunken stomata, a prominent wax layer and trichomes. The range of epidermal morphologies present in this genus is described and the use of these to inform infrageneric classification in Conophytum is discussed. In many cases the epidermis of closely related species is similar but this is not always the case across the 16 sections that comprise the genus. Whilst this study confirms the assignment of several recently described taxa to existing sections it suggests that the infrageneric classification of Conophytum needs to be re-evaluated.

Young, A. J., L. Pulido Suarez, M. Kapralov, and M. R. Opel. 2017. Leaf epidermal structure in the dwarf succulent genus Conophytum NE Br.(Aizoaceae). Bradleya 35: 217–237. pdf